Throw the SD card away and use a new one. It is quite a common mode of failure of the cards that they appear to work fine except that the new data is not being saved in the flash storage.
If it would save you a lot of time then it is probably ok to make an image copy of the old card onto the new one before you bin it. However it would be better to start from scratch and restore your flows file from your most recent backup onto the new card.
[Edit] Make sure you use a good quality branded SD card from a reputable source. Don't use cheap ones from ebay, it is a false economy.